PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765072.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 407aa    MW: 46324.4 Da    PI: 7.4481
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.11e-132334072374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                     ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r  s+  + l+ps+  e++  s+   +++  +++v+P+++fs
  XP_009765072.1  33 RQLLISCAELISRSDFSAANRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRYISSATNFLTPSNVVESSndSALLQSSYLSLNQVTPFIRFS 127
                     89****************************************************999999999877765554224455555666*********** PP

            GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrl 186
                     +ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R  +pp+lRiTg g+    + ++l++tg+rLakfA++lg++f+f++l  + ++ 
  XP_009765072.1 128 QLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFHPLliTNNND 217
                     ************998799***********************9.999**********....***************************96433355 PP

            GRAS 187 edlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     +d ++   +++ + p+E+la+n+v+ lhrll+++ +l+     +L+ +ks++Pkvv+++e+ea+hn++ Fl+rf+eal+yy+a+fdslea+lp+ 
  XP_009765072.1 218 NDHDPsiiSSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRIKSMNPKVVTLAEREANHNHPLFLQRFVEALDYYAAVFDSLEATLPPS 308
                     555551115556777****************99999999....**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsv 370
                     s+er++vE++++grei ++va+eg++rrerhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++   + s+s++lgW+++pL+s+
  XP_009765072.1 309 SRERMTVEQVWFGREIIDIVAAEGDKRRERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLSvsSTSNSFFLGWQNQPLFSI 403
                     ************************************************************************98855779*************** PP

            GRAS 371 SaWr 374
                     S+Wr
  XP_009765072.1 404 SSWR 407
                     ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.4436384IPR005202Transcription factor GRAS
PfamPF035143.5E-13033407IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLGSFGSSSQ SHDEETDDQR RRFSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST  60
NSSPFGDSTE RLVHQFTRAL SLRLNRYISS ATNFLTPSNV VESSNDSALL QSSYLSLNQV  120
TPFIRFSQLT ANQAILEAIN DNQQAIHIVD FDINHGVQWP PLMQALADRY PPPTLRITGT  180
GNDLDTLRRT GDRLAKFAHS LGLRFQFHPL LITNNNDNDH DPSIISSIVL LPDETLAINC  240
VFYLHRLLKD REKLRIFLHR IKSMNPKVVT LAEREANHNH PLFLQRFVEA LDYYAAVFDS  300
LEATLPPSSR ERMTVEQVWF GREIIDIVAA EGDKRRERHE RFRSWEVMLR SCGFSNVALS  360
PFALSQAKLL LRLHYPSEGY QLSVSSTSNS FFLGWQNQPL FSISSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-62324074375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9355810.0EU935581.1 Nicotiana tabacum lateral suppressor protein (Ls) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765072.10.0PREDICTED: scarecrow-like protein 18
RefseqXP_016443191.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLB5M4A50.0B5M4A5_TOBAC; Lateral suppressor protein
STRINGPGSC0003DMT4000572650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-133GRAS family protein